PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG508000.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 403aa    MW: 40186.5 Da    PI: 5.3942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG508000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12205250555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Pavir.1NG508000.2.p 205 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 250
                          99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-17198259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16202259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-13204254No hitNo description
PfamPF000102.6E-9205250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MQPSGREMQG VGGGGQDDFF DQMLSTLPAA WSDLGSGKSH WELPAAGASE DAAFDESALL  60
ASRLRHHQIG GGGDKPVMLH LSDLHGLAAS GEDGGAAGFL PLPLFTDRAR EDMDAAFKSP  120
NAAGGDQALY NGFGAAGMHG AAAVPPQFGQ GGSMPAQSFG GGAASGGGGS APAGAPAAGA  180
SPGGGAAPPR QQRQRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD  240
EIIDYVKFLQ LQVKVLSMSR LGGAAGVGPL VANMSSEGNG NGNGTSDSGD GDAANGGGNG  300
ENGGGSLKVT EQQVAKLMEE DMGTAMQYLQ GKGLCLMPIS LASAISSATS SSLLSRPSIG  360
SMGSARGGPA HEGGNPASPP LMNGAGGDDS RTVKDAGAGS KQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.297050.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151181.10.0uncharacterized protein LOC100284814
SwissprotQ9ZUG93e-74BH066_ARATH; Transcription factor bHLH66
TrEMBLB6TXR40.0B6TXR4_MAIZE; BHLH transcription factor
STRINGSb04g035890.11e-173(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.19e-35LJRHL1-like 1